Variant report

Variant	rs6908861
Chromosome Location	chr6:164195284-164195285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164194495..164199881-chr6:164208039..164212902,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QKI-2	chr6:164194173-164195657	XLOC_005531
2	lnc-QKI-2	chr6:164194926-164195409	XLOC_005531

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484518	0.88[ASN][1000 genomes]
rs13194833	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13207179	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1475208	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1555228	0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs16895346	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16895356	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16895451	0.83[EUR][1000 genomes]
rs16895454	0.83[EUR][1000 genomes]
rs34732286	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34811073	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34839002	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35390637	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35545234	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3967298	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4709015	1.00[ASN][1000 genomes]
rs4709018	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4709758	1.00[ASN][1000 genomes]
rs4709759	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60028618	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66758520	0.92[ASN][1000 genomes]
rs6902564	0.82[EUR][1000 genomes]
rs6907455	0.83[EUR][1000 genomes]
rs6911532	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911882	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922730	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6923240	0.93[ASN][1000 genomes]
rs6927723	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6929655	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7341259	1.00[ASN][1000 genomes]
rs7741725	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742329	1.00[ASN][1000 genomes]
rs7742572	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765450	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7772777	0.88[ASN][1000 genomes]
rs9365609	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9365610	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164186000-164200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
3	chr6:164192400-164195400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:164192600-164196200	Weak transcription	K562	blood
5	chr6:164195000-164197000	Weak transcription	Fetal Heart	heart
6	chr6:164195200-164197400	Weak transcription	Fetal Muscle Trunk	muscle

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