The 2.0 version of rSNPBase

Variant report

Variant rs6908889
Chromosome Location chr6:100987989-100987990
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:100952800-100997400 Weak transcription A549 lung
2 chr6:100955800-100991200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr6:100957400-100992400 Weak transcription Small Intestine intestine
4 chr6:100960600-100990200 Weak transcription Brain Substantia Nigra brain
5 chr6:100960800-100989600 Weak transcription K562 blood
6 chr6:100960800-100989800 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr6:100960800-101035000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr6:100961000-100988800 Weak transcription NHEK skin
9 chr6:100961000-100991200 Weak transcription HSMMtube muscle
10 chr6:100961000-100992000 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr6:100961000-100997200 Weak transcription Muscle Satellite Cultured Cells --
12 chr6:100961200-100989000 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr6:100964000-100990800 Weak transcription Primary hematopoietic stem cells blood
14 chr6:100964200-101020000 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr6:100964800-100998400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr6:100965200-100989600 Weak transcription Aorta Aorta
17 chr6:100965200-100990200 Weak transcription Left Ventricle heart
18 chr6:100965200-101000800 Weak transcription Fetal Intestine Small intestine
19 chr6:100965200-101011400 Weak transcription Pancreas Pancrea
20 chr6:100965400-100988600 Weak transcription Lung lung
21 chr6:100965400-100989600 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr6:100965400-100989800 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr6:100965400-100990400 Weak transcription Duodenum Mucosa Duodenum
24 chr6:100965400-100991800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr6:100965400-101005000 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr6:100965600-101033600 Weak transcription Ovary ovary
27 chr6:100966000-101002400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr6:100966200-100991000 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr6:100966200-100996800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr6:100969800-100988000 Weak transcription Esophagus oesophagus
31 chr6:100978200-101008200 Weak transcription NHDF-Ad bronchial
32 chr6:100978600-100989800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr6:100978600-101019400 Weak transcription HMEC breast
34 chr6:100979000-100989600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr6:100979200-100991400 Weak transcription Liver Liver
36 chr6:100979800-101018200 Weak transcription Primary T cells from cord blood blood
37 chr6:100981800-100990000 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr6:100981800-101001400 Weak transcription Brain Hippocampus Middle brain
39 chr6:100983000-100989600 Strong transcription Dnd41 blood
40 chr6:100984000-100988200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr6:100984400-100989000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
42 chr6:100984800-100991200 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr6:100984800-101000400 Weak transcription HepG2 liver
44 chr6:100985800-100988800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr6:100986000-100988000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr6:100986000-100988200 Strong transcription GM12878-XiMat blood
47 chr6:100986000-100988400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr6:100986200-100988800 Weak transcription Fetal Muscle Leg muscle
49 chr6:100986400-100988200 Strong transcription Primary T helper cells fromperipheralblood blood
50 chr6:100986400-100988800 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015