Variant report

Variant	rs6910184
Chromosome Location	chr6:164274382-164274383
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484518	0.80[ASN][1000 genomes]
rs13194833	0.89[EUR][1000 genomes]
rs13207179	0.91[EUR][1000 genomes]
rs16895346	0.89[EUR][1000 genomes]
rs16895356	0.91[EUR][1000 genomes]
rs2207443	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34732286	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34811073	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34839002	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35390637	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35545234	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56095211	0.82[EUR][1000 genomes]
rs66758520	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67410945	0.82[EUR][1000 genomes]
rs67424524	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67478587	0.83[EUR][1000 genomes]
rs6911532	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6911882	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6916946	0.83[EUR][1000 genomes]
rs6922730	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6927723	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6929655	0.92[EUR][1000 genomes]
rs7741725	0.91[EUR][1000 genomes]
rs7742572	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7749407	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7765450	0.91[EUR][1000 genomes]
rs7772777	0.80[ASN][1000 genomes]
rs9365610	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164273400-164274800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:164273600-164276200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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