Variant report

Variant	rs6910738
Chromosome Location	chr6:101034270-101034271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1006398	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1006399	0.93[EUR][1000 genomes]
rs12194255	0.80[ASN][1000 genomes]
rs12209777	0.80[ASN][1000 genomes]
rs180963	0.80[ASN][1000 genomes]
rs183566	0.80[ASN][1000 genomes]
rs239198	0.80[ASN][1000 genomes]
rs239209	0.80[ASN][1000 genomes]
rs239215	0.80[ASN][1000 genomes]
rs240765	0.94[EUR][1000 genomes]
rs240766	0.91[EUR][1000 genomes]
rs240770	0.80[EUR][1000 genomes]
rs240772	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs240773	0.80[EUR][1000 genomes]
rs240774	0.92[EUR][1000 genomes]
rs240776	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs240784	0.91[EUR][1000 genomes]
rs7452753	0.85[EUR][1000 genomes]
rs7748644	0.80[ASN][1000 genomes]
rs9377058	0.81[AMR][1000 genomes]
rs9386193	0.82[EUR][1000 genomes]
rs9485165	0.80[EUR][1000 genomes]
rs997229	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv463986	chr6:100995048-101084946	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv604264	chr6:100995048-101084946	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886446	chr6:101018032-101084946	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886447	chr6:101018032-101091434	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100960800-101035000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:100988200-101035000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:100988200-101035000	Weak transcription	GM12878-XiMat	blood
4	chr6:101006200-101035400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:101009000-101034600	Weak transcription	NH-A	brain
6	chr6:101009000-101035000	Weak transcription	NHDF-Ad	bronchial
7	chr6:101009000-101035200	Weak transcription	Osteobl	bone
8	chr6:101009000-101065600	Weak transcription	NHEK	skin
9	chr6:101011000-101080800	Weak transcription	HepG2	liver
10	chr6:101011400-101035000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:101015800-101049200	Weak transcription	Esophagus	oesophagus
12	chr6:101016400-101065800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:101017200-101069400	Weak transcription	Fetal Lung	lung
14	chr6:101017600-101034800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:101017800-101035400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:101017800-101069800	Weak transcription	Lung	lung
17	chr6:101018400-101051200	Weak transcription	Right Ventricle	heart
18	chr6:101018600-101034800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:101018600-101038400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:101018600-101040800	Weak transcription	HSMMtube	muscle
21	chr6:101019000-101047800	Weak transcription	Small Intestine	intestine
22	chr6:101019400-101034400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:101020400-101034800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:101020400-101034800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:101020400-101035000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:101020400-101035000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:101020400-101035400	Weak transcription	HSMM	muscle
28	chr6:101020400-101036800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:101020400-101066200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:101022200-101035600	Weak transcription	HMEC	breast
31	chr6:101023200-101037200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:101025600-101035600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:101027800-101034400	Weak transcription	Liver	Liver
35	chr6:101027800-101035000	Weak transcription	Primary B cells from cord blood	blood
36	chr6:101027800-101049600	Weak transcription	Fetal Kidney	kidney
37	chr6:101027800-101070000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:101028000-101034800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:101028000-101068800	Weak transcription	Psoas Muscle	Psoas
40	chr6:101030200-101070000	Weak transcription	Aorta	Aorta
41	chr6:101030600-101035000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:101031200-101048600	Weak transcription	Brain Anterior Caudate	brain
43	chr6:101032200-101038200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
45	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:101032600-101046600	Weak transcription	Gastric	stomach
47	chr6:101032600-101047600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:101032800-101065600	Weak transcription	Colonic Mucosa	Colon

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