Variant report

Variant	rs6911086
Chromosome Location	chr6:150721445-150721446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150720777..150722938-chr6:150732800..150734541,2	MCF-7	breast:
2	chr6:150717285..150719589-chr6:150720584..150722449,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11969964	0.96[GIH][hapmap]
rs12208588	0.88[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.89[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12530375	0.87[JPT][hapmap]
rs1416481	0.84[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1556881	0.91[GIH][hapmap];0.81[JPT][hapmap]
rs2076284	0.87[ASW][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap]
rs2076285	0.88[ASW][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap]
rs2076286	0.87[JPT][hapmap]
rs2076287	0.91[GIH][hapmap];0.81[JPT][hapmap]
rs2076288	0.81[JPT][hapmap]
rs2076289	0.91[GIH][hapmap];0.81[JPT][hapmap]
rs2076290	0.81[JPT][hapmap]
rs2076291	0.81[JPT][hapmap]
rs2076292	0.81[JPT][hapmap]
rs3734734	0.81[JPT][hapmap]
rs3823259	0.81[ASW][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap]
rs4407723	0.81[JPT][hapmap]
rs5029121	0.81[JPT][hapmap]
rs657972	0.95[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6934177	1.00[EUR][1000 genomes]
rs7740863	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7761906	0.91[GIH][hapmap];0.81[JPT][hapmap]
rs7762616	0.87[JPT][hapmap]
rs7763368	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.82[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7768510	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.82[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7774077	0.82[ASW][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap]
rs9372012	0.96[GIH][hapmap]
rs9397292	0.91[GIH][hapmap]
rs9397303	0.96[GIH][hapmap];0.81[JPT][hapmap]
rs9397944	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464078	chr6:150720439-150729878	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv604849	chr6:150720439-150729878	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6911086	ULBP1	cis	cerebellum	SCAN
rs6911086	ULBP2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150718200-150721800	Strong transcription	Liver	Liver
2	chr6:150719600-150723800	Weak transcription	Fetal Heart	heart
3	chr6:150720600-150723000	Weak transcription	Fetal Intestine Small	intestine

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