Variant report

Variant	rs6911260
Chromosome Location	chr6:56115489-56115490
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56109021..56112703-chr6:56113048..56115800,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124749	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10456731	0.86[CEU][hapmap]
rs10755782	0.82[YRI][hapmap]
rs10755783	0.82[YRI][hapmap]
rs12195053	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209054	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12209474	0.87[ASN][1000 genomes]
rs12213867	0.87[ASN][1000 genomes]
rs3846930	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3996938	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4361616	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4385303	0.82[YRI][hapmap]
rs4427001	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4521578	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4715600	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715601	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715605	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57818602	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6940268	1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs724677	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7746772	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296836	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382607	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9464373	0.87[ASN][1000 genomes]
rs9464374	0.87[ASN][1000 genomes]
rs9475653	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9475656	0.87[ASN][1000 genomes]
rs9475657	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56112800-56116600	Weak transcription	Psoas Muscle	Psoas
2	chr6:56113000-56120200	Weak transcription	Aorta	Aorta
3	chr6:56113200-56117000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:56113400-56116600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:56113400-56116800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:56113400-56123800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:56113600-56117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:56115400-56116600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:56115400-56116800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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