Variant report

Variant	rs6911882
Chromosome Location	chr6:164204369-164204370
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164202097..164205034-chr6:164205906..164208942,3	K562	blood:
2	chr6:164197060..164200042-chr6:164203079..164205559,3	K562	blood:
3	chr6:164202097..164204783-chr6:164205906..164208764,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484518	0.90[ASN][1000 genomes]
rs13194833	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13207179	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1475208	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1555228	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16895346	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16895356	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2207443	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34732286	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34811073	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34839002	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35390637	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35545234	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3967298	0.90[ASN][1000 genomes]
rs4709015	0.97[ASN][1000 genomes]
rs4709018	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4709758	0.97[ASN][1000 genomes]
rs4709759	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60028618	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66758520	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6908861	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910184	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6911532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922730	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6923240	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6927723	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6929655	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73019178	0.80[ASN][1000 genomes]
rs7341259	0.97[ASN][1000 genomes]
rs7741725	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742329	0.97[ASN][1000 genomes]
rs7742572	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756548	0.80[ASN][1000 genomes]
rs7765450	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772777	0.90[ASN][1000 genomes]
rs9365609	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9365610	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164197200-164204400	Enhancers	Fetal Muscle Leg	muscle
2	chr6:164200800-164209200	Weak transcription	Psoas Muscle	Psoas
3	chr6:164201000-164204600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:164202400-164209400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:164202600-164209200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:164202800-164208000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:164203400-164204400	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:164203400-164204400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:164203600-164204400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:164203600-164204400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:164203600-164204400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:164203600-164204400	Enhancers	Primary T cells from cord blood	blood
13	chr6:164203600-164204400	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:164203600-164204400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:164203600-164204400	Enhancers	Fetal Thymus	thymus
16	chr6:164203600-164205200	Enhancers	Fetal Heart	heart
17	chr6:164203800-164208200	Weak transcription	K562	blood
18	chr6:164204000-164204400	Enhancers	GM12878-XiMat	blood
19	chr6:164204000-164209200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:164204000-164210400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:164204000-164210600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links