Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1011188	0.89[CEU][hapmap]
rs10498681	0.89[CEU][hapmap]
rs12525210	1.00[CEU][hapmap]
rs12526812	0.89[CEU][hapmap]
rs12528721	0.82[CEU][hapmap]
rs12530470	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1332851	1.00[CEU][hapmap]
rs1571996	0.89[CEU][hapmap]
rs1572001	0.89[CEU][hapmap]
rs17616767	0.89[CEU][hapmap]
rs17678734	0.89[CEU][hapmap]
rs2015761	1.00[CEU][hapmap]
rs2151221	0.89[CEU][hapmap]
rs2876298	0.89[CEU][hapmap]
rs35278288	0.89[CEU][hapmap]
rs4577783	0.89[CEU][hapmap]
rs4583985	0.89[CEU][hapmap]
rs4711817	0.89[CEU][hapmap]
rs4714931	0.80[CEU][hapmap]
rs475543	1.00[JPT][hapmap]
rs560810	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs581046	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6915585	0.89[CEU][hapmap]
rs7768030	0.89[CEU][hapmap]
rs9357466	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357486	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367216	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369612	0.89[CEU][hapmap]
rs9381384	0.97[ASN][1000 genomes]
rs9381451	0.89[CEU][hapmap]
rs9395098	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9463093	0.88[CEU][hapmap]
rs9463114	0.89[CEU][hapmap]
rs9463117	0.89[CEU][hapmap]
rs9463119	0.89[CEU][hapmap]
rs9472513	0.89[CEU][hapmap]
rs9472514	0.89[CEU][hapmap]
rs9472528	0.89[CEU][hapmap]
rs9472549	0.89[CEU][hapmap]
rs9472566	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12709000-12722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:12710600-12723400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:12710800-12729600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:12712600-12725000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:12712800-12724800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:12716800-12724800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:12716800-12729600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:12718600-12721200	Active TSS	Brain Angular Gyrus	brain
9	chr6:12718600-12722400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:12718600-12723400	Active TSS	Brain Anterior Caudate	brain
11	chr6:12718600-12725000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:12719400-12722600	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:12720800-12721800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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