Variant report

Variant	rs6916092
Chromosome Location	chr6:64269847-64269848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10943869	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12523702	0.84[CEU][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs13191932	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13200519	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13205487	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13213141	0.82[EUR][1000 genomes]
rs13217662	0.87[EUR][1000 genomes]
rs17396843	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs1744134	0.82[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs1744143	0.84[EUR][1000 genomes]
rs1744153	0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1779777	0.84[EUR][1000 genomes]
rs2025178	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2622312	0.81[CEU][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2758244	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71534831	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7753325	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6916092	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64263600-64270600	Weak transcription	Stomach Mucosa	stomach
2	chr6:64265800-64270800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:64266400-64270800	Weak transcription	HMEC	breast
4	chr6:64267000-64270800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:64267000-64270800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:64267000-64275400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:64267200-64270800	Weak transcription	NHEK	skin
8	chr6:64268200-64270400	Enhancers	A549	lung
9	chr6:64268200-64273000	Enhancers	Hela-S3	cervix
10	chr6:64269800-64270000	Enhancers	Liver	Liver
11	chr6:64269800-64271000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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