Variant report

Variant	rs6916096
Chromosome Location	chr6:12909738-12909739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10498680	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11752630	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754198	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12176425	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1537341	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571999	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210514	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs4714988	1.00[CHB][hapmap]
rs6902050	1.00[CHB][hapmap]
rs6912234	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912630	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs6917613	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940481	1.00[TSI][hapmap]
rs6941877	0.87[TSI][hapmap]
rs73726220	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9296522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9296526	1.00[TSI][hapmap]
rs9349390	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs9367262	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs9369654	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs9381511	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs9381512	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs9472888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12896600-12911000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:12906000-12912000	Weak transcription	Aorta	Aorta
3	chr6:12907000-12911200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:12907800-12911400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:12908800-12909800	Enhancers	Brain Germinal Matrix	brain
6	chr6:12908800-12911000	Enhancers	Fetal Brain Female	brain
7	chr6:12909000-12909800	Weak transcription	Fetal Heart	heart
8	chr6:12909000-12910000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:12909000-12910000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:12909400-12910600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:12909600-12910200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:12909600-12910400	Enhancers	Fetal Brain Male	brain

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