Variant report

Variant	rs6918121
Chromosome Location	chr6:80674270-80674271
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1007416	0.92[CHB][hapmap]
rs12663071	0.92[ASN][1000 genomes]
rs12663092	0.99[ASN][1000 genomes]
rs13201038	1.00[CHB][hapmap]
rs1355576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398161	1.00[CHB][hapmap]
rs149293	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1512120	0.80[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs151586	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs151650	0.82[ASN][1000 genomes]
rs151666	0.93[CHB][hapmap]
rs151674	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16891260	1.00[CHB][hapmap]
rs1818439	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2117446	1.00[ASN][1000 genomes]
rs2322554	1.00[CHB][hapmap]
rs239506	0.97[ASN][1000 genomes]
rs239508	0.81[ASN][1000 genomes]
rs239520	1.00[CHB][hapmap]
rs239526	1.00[CHB][hapmap]
rs239529	1.00[CHB][hapmap]
rs239532	1.00[CHB][hapmap]
rs239545	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs239546	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs239547	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs239550	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs239551	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2991	1.00[CHB][hapmap]
rs343623	1.00[CHB][hapmap]
rs343628	1.00[CHB][hapmap]
rs343629	1.00[CHB][hapmap]
rs343705	1.00[CHB][hapmap]
rs35626280	1.00[ASN][1000 genomes]
rs3812153	1.00[CHB][hapmap]
rs4552689	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4706821	0.97[ASN][1000 genomes]
rs4706822	0.80[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60373337	0.99[ASN][1000 genomes]
rs6915142	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743696	1.00[CHB][hapmap]
rs7754628	1.00[CHB][hapmap]
rs865264	1.00[CHB][hapmap]
rs9294167	0.97[ASN][1000 genomes]
rs9343948	0.99[ASN][1000 genomes]
rs9343950	0.99[ASN][1000 genomes]
rs9343951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343952	0.84[ASN][1000 genomes]
rs9343956	0.99[ASN][1000 genomes]
rs9350836	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9352786	1.00[ASN][1000 genomes]
rs9352787	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9361576	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9361578	0.83[ASN][1000 genomes]
rs9448857	1.00[CHB][hapmap]
rs9448863	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3475140	chr6:80592690-80679283	Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3475142	chr6:80592789-80679132	Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv965652	chr6:80663704-80688769	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80672400-80676200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:80673200-80677000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:80673800-80674400	Flanking Active TSS	Thymus	Thymus
4	chr6:80673800-80674800	Enhancers	Fetal Thymus	thymus
5	chr6:80673800-80676000	Flanking Active TSS	Dnd41	blood
6	chr6:80674000-80674800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:80674200-80675000	Enhancers	Primary T cells from cord blood	blood
8	chr6:80674200-80675000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:80674200-80675200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links