Variant report

Variant	rs6920026
Chromosome Location	chr6:100952907-100952908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100935491..100937545-chr6:100952040..100953953,2	K562	blood:
2	chr6:100950233..100952061-chr6:100952645..100955595,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM13-10	chr6:100951626-100955498	NONHSAT114157

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17060629	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17060659	0.92[ASN][1000 genomes]
rs3798484	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs58927095	0.92[ASN][1000 genomes]
rs6907007	0.92[ASN][1000 genomes]
rs6934173	0.92[ASN][1000 genomes]
rs6942018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7755091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7755275	0.92[ASN][1000 genomes]
rs7766553	1.00[JPT][hapmap]
rs9322060	0.92[ASN][1000 genomes]
rs9485075	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9485089	0.92[ASN][1000 genomes]
rs9485091	0.92[ASN][1000 genomes]
rs9485097	0.92[ASN][1000 genomes]
rs9485098	0.92[ASN][1000 genomes]
rs9497479	1.00[JPT][hapmap]
rs9497547	0.92[ASN][1000 genomes]
rs9497562	0.92[ASN][1000 genomes]
rs9497585	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100949800-100966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100950200-100959000	Weak transcription	Pancreas	Pancrea
3	chr6:100950400-100954000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:100950400-100955000	Enhancers	Osteobl	bone
5	chr6:100950400-100959200	Weak transcription	Gastric	stomach
6	chr6:100951200-100953200	Enhancers	HSMM	muscle
7	chr6:100951200-100959200	Weak transcription	Left Ventricle	heart
8	chr6:100951400-100953600	Enhancers	NHDF-Ad	bronchial
9	chr6:100951400-100959400	Weak transcription	HepG2	liver
10	chr6:100951400-100960000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:100951600-100953400	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:100951600-100957000	Weak transcription	Small Intestine	intestine
13	chr6:100951600-100969800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:100952000-100953600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:100952000-100955000	Enhancers	HSMMtube	muscle
16	chr6:100952000-100956400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:100952200-100953200	Weak transcription	Aorta	Aorta
18	chr6:100952200-100955000	Enhancers	NH-A	brain
19	chr6:100952200-100955200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:100952200-100955400	Weak transcription	Liver	Liver
21	chr6:100952200-100956000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:100952200-100957000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:100952400-100953400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:100952400-100953600	Enhancers	HMEC	breast
25	chr6:100952400-100954200	Weak transcription	Dnd41	blood
26	chr6:100952400-100957000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:100952400-100959800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:100952600-100953000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:100952600-100953200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:100952600-100953200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:100952600-100953200	Enhancers	NHEK	skin
32	chr6:100952600-100953400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:100952600-100953400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:100952600-100953400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:100952600-100953600	Enhancers	NHLF	lung
36	chr6:100952600-100953800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:100952600-100955000	Enhancers	HUVEC	blood vessel
38	chr6:100952600-100955600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:100952600-100956800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:100952600-100957000	Weak transcription	Fetal Lung	lung
41	chr6:100952600-100967600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr6:100952800-100953000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:100952800-100953000	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:100952800-100953000	Enhancers	Adipose Nuclei	Adipose
45	chr6:100952800-100953000	Enhancers	Ovary	ovary
46	chr6:100952800-100953200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:100952800-100955600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:100952800-100955600	Weak transcription	Primary B cells from cord blood	blood
49	chr6:100952800-100959000	Weak transcription	Fetal Intestine Small	intestine
50	chr6:100952800-100997400	Weak transcription	A549	lung

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