Variant report

Variant	rs6920090
Chromosome Location	chr6:56143874-56143875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12110798	0.95[ASN][1000 genomes]
rs12208321	0.84[EUR][1000 genomes]
rs1925140	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147696	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397211	0.95[ASN][1000 genomes]
rs2397214	0.86[AFR][1000 genomes]
rs2894834	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4355611	0.86[AFR][1000 genomes]
rs60407790	0.95[ASN][1000 genomes]
rs62411896	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459141	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902532	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904902	0.95[ASN][1000 genomes]
rs6905216	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917061	0.81[EUR][1000 genomes]
rs6919257	0.95[ASN][1000 genomes]
rs6923130	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931235	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6931381	0.90[ASN][1000 genomes]
rs7753541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757732	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760380	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7765410	0.86[AFR][1000 genomes]
rs9296835	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296837	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357899	0.81[AFR][1000 genomes]
rs9396187	0.85[AFR][1000 genomes]
rs9464368	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464370	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475643	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475645	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475647	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475648	0.84[EUR][1000 genomes]
rs9475649	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56142000-56144000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:56142600-56145000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:56142800-56144400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:56142800-56144600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:56142800-56144800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:56143000-56144000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:56143000-56144000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:56143400-56145200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:56143600-56144000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:56143600-56145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:56143600-56156200	Weak transcription	Fetal Lung	lung
12	chr6:56143800-56144200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:56143800-56144200	Enhancers	A549	lung
14	chr6:56143800-56144800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:56143800-56156200	Weak transcription	Colon Smooth Muscle	Colon

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