Variant report

Variant	rs6920413
Chromosome Location	chr6:150642305-150642306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58245853	0.93[AFR][1000 genomes]
rs58767325	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60342957	0.93[AFR][1000 genomes]
rs6919505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73614100	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615806	0.87[AFR][1000 genomes]
rs73615807	0.93[AFR][1000 genomes]
rs73615809	0.93[AFR][1000 genomes]
rs73615812	0.93[AFR][1000 genomes]
rs73615816	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv524641	chr6:150625572-150644030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv5538	chr6:150640370-150652751	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1964882	chr6:150642305-150642306	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150639600-150643200	Weak transcription	Lung	lung
2	chr6:150640600-150643400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:150641200-150645000	Enhancers	K562	blood
4	chr6:150641800-150642800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:150641800-150643200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:150641800-150644400	Weak transcription	Left Ventricle	heart
7	chr6:150642000-150646200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:150642000-150648200	Weak transcription	Aorta	Aorta
9	chr6:150642000-150648400	Weak transcription	Right Ventricle	heart
10	chr6:150642200-150642600	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:150642200-150642600	Weak transcription	Psoas Muscle	Psoas
12	chr6:150642200-150642600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:150642200-150643000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:150642200-150643600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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