Variant report

Variant	rs6921265
Chromosome Location	chr6:13174582-13174583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16869298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887846	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28451621	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6934799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937019	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752718	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7771038	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9473641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9473643	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13150000-13175600	Weak transcription	Lung	lung
2	chr6:13153400-13178000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:13153600-13178200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:13153600-13178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
6	chr6:13154000-13175600	Weak transcription	Fetal Heart	heart
7	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:13159600-13178400	Weak transcription	Right Ventricle	heart
9	chr6:13160000-13177400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:13162400-13175600	Weak transcription	Left Ventricle	heart
11	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
14	chr6:13166600-13175400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:13166600-13177800	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:13171000-13175600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:13171800-13175600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:13172000-13175400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:13172400-13176200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:13172400-13176600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:13172400-13176600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:13172600-13176800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:13172800-13175600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:13173000-13175400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:13173600-13176800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:13173800-13174600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:13174200-13174600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:13174200-13174600	Enhancers	Fetal Brain Female	brain
30	chr6:13174400-13174800	Enhancers	Brain Anterior Caudate	brain

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