Variant report

Variant	rs6923878
Chromosome Location	chr6:12969576-12969577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12967955..12970126-chr6:12970232..12972155,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11755825	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12111175	0.89[EUR][1000 genomes]
rs13194360	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs35266083	0.86[ASN][1000 genomes]
rs4236093	1.00[CHB][hapmap];0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs59778206	0.90[ASN][1000 genomes]
rs6458577	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906890	1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6929107	0.88[ASN][1000 genomes]
rs7741655	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs7757180	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7769758	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7773579	1.00[CEU][hapmap]
rs7773750	1.00[CEU][hapmap]
rs7775566	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7775710	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[ASN][1000 genomes]
rs9296522	1.00[CEU][hapmap]
rs9473070	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9473082	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12963600-12971000	Weak transcription	HSMM	muscle
2	chr6:12963600-12971600	Weak transcription	Spleen	Spleen
3	chr6:12963600-12972400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:12963600-12973000	Weak transcription	Pancreas	Pancrea
5	chr6:12963600-12974600	Weak transcription	Right Ventricle	heart
6	chr6:12964000-12971400	Enhancers	Fetal Heart	heart
7	chr6:12964000-12988000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:12965200-12971000	Weak transcription	HUVEC	blood vessel
9	chr6:12966600-12972800	Weak transcription	Lung	lung
10	chr6:12966800-12975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:12968200-12970400	Enhancers	Aorta	Aorta
12	chr6:12968400-12976000	Weak transcription	Left Ventricle	heart
13	chr6:12968600-12969600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:12968600-12973200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:12968800-12973600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:12968800-12975000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:12968800-12977400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:12968800-12978200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:12969000-12971600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:12969200-12969600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:12969400-12969800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:12969400-12972400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:12969400-12973400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:12969400-12973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:12969400-12973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:12969400-12974200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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