Variant report

Variant	rs6924301
Chromosome Location	chr6:99311129-99311130
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10484609	0.89[CEU][hapmap]
rs12110701	0.90[CEU][hapmap]
rs12110702	0.90[CEU][hapmap]
rs12173555	0.83[AMR][1000 genomes]
rs1474606	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1884185	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2016597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124137	0.85[EUR][1000 genomes]
rs2300062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2300063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2388750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572095	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs2572099	0.89[AMR][1000 genomes]
rs2572109	0.89[AMR][1000 genomes]
rs2747731	0.89[AMR][1000 genomes]
rs2747733	0.89[AMR][1000 genomes]
rs28488166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35727107	0.90[ASN][1000 genomes]
rs3756986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3823035	0.89[CEU][hapmap]
rs55923681	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs67597785	0.81[AFR][1000 genomes]
rs6928645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73503620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73505759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7450561	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7742800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321243	0.89[CEU][hapmap]
rs9372960	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372961	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9372982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9375721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375728	1.00[CEU][hapmap]
rs9375729	1.00[CEU][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs9375730	0.90[CEU][hapmap]
rs9375733	0.90[CEU][hapmap]
rs9375807	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs9385544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388785	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388789	0.85[EUR][1000 genomes]
rs9388809	0.89[CEU][hapmap]
rs9388814	0.90[CEU][hapmap]
rs9388895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs9388899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9388909	0.89[AMR][1000 genomes]
rs9402235	0.90[CEU][hapmap]
rs9402255	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99294600-99347800	Weak transcription	Brain Substantia Nigra	brain
2	chr6:99297000-99386000	Weak transcription	Fetal Brain Male	brain
3	chr6:99298200-99333200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:99298600-99345400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:99300000-99313800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:99303800-99317000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:99304000-99326600	Weak transcription	Left Ventricle	heart
8	chr6:99304000-99358600	Weak transcription	Aorta	Aorta
9	chr6:99304200-99312400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:99304600-99387200	Weak transcription	A549	lung
11	chr6:99305800-99319400	Weak transcription	Dnd41	blood
12	chr6:99309200-99323200	Weak transcription	HSMM	muscle
13	chr6:99309400-99312200	Weak transcription	Ovary	ovary
14	chr6:99309400-99326600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:99309600-99319000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:99309600-99319400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:99309600-99346800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:99309600-99351600	Weak transcription	NHDF-Ad	bronchial
19	chr6:99309600-99383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:99309800-99377400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:99310400-99319200	Weak transcription	Primary B cells from cord blood	blood
22	chr6:99310400-99328400	Weak transcription	Fetal Intestine Small	intestine
23	chr6:99310600-99319000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:99310800-99311200	Weak transcription	Gastric	stomach
25	chr6:99310800-99319400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:99310800-99319600	Weak transcription	NHEK	skin
27	chr6:99310800-99330200	Weak transcription	Fetal Lung	lung
28	chr6:99310800-99334400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:99311000-99313800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:99311000-99326800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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