Variant report

Variant	rs6925287
Chromosome Location	chr6:101538288-101538289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10782325	0.85[ASN][1000 genomes]
rs11155850	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155855	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12164026	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3905202	0.81[AMR][1000 genomes]
rs4133169	0.82[ASN][1000 genomes]
rs4143742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4291101	0.97[ASN][1000 genomes]
rs4329122	0.84[ASN][1000 genomes]
rs4376359	0.85[ASN][1000 genomes]
rs4385317	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4598083	0.85[ASN][1000 genomes]
rs58920424	0.98[ASN][1000 genomes]
rs61647432	0.84[ASN][1000 genomes]
rs6905979	0.85[ASN][1000 genomes]
rs6906423	0.81[AMR][1000 genomes]
rs6912251	0.98[ASN][1000 genomes]
rs6915514	0.85[ASN][1000 genomes]
rs6938926	0.98[ASN][1000 genomes]
rs72610828	0.98[ASN][1000 genomes]
rs72610830	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72610831	0.84[ASN][1000 genomes]
rs72610833	0.82[ASN][1000 genomes]
rs72610834	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72610835	0.81[ASN][1000 genomes]
rs7749035	0.85[ASN][1000 genomes]
rs7753454	0.85[ASN][1000 genomes]
rs7753811	0.85[ASN][1000 genomes]
rs7754468	0.84[ASN][1000 genomes]
rs7768736	0.98[ASN][1000 genomes]
rs7768876	0.82[ASN][1000 genomes]
rs7773911	0.82[ASN][1000 genomes]
rs9322333	0.82[ASN][1000 genomes]
rs9322380	0.85[ASN][1000 genomes]
rs9373603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377259	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9377260	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9377261	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377262	0.82[ASN][1000 genomes]
rs9386270	0.86[ASN][1000 genomes]
rs9390700	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs9390720	0.84[ASN][1000 genomes]
rs9390721	0.98[ASN][1000 genomes]
rs9390722	0.84[ASN][1000 genomes]
rs9390723	0.84[ASN][1000 genomes]
rs9390725	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390731	0.82[ASN][1000 genomes]
rs9390732	0.82[ASN][1000 genomes]
rs9399704	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399705	0.85[ASN][1000 genomes]
rs9399706	0.85[ASN][1000 genomes]
rs9399712	0.81[ASN][1000 genomes]
rs9404080	0.98[ASN][1000 genomes]
rs9404083	0.84[ASN][1000 genomes]
rs9404085	0.82[ASN][1000 genomes]
rs9404089	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs9485452	0.81[ASN][1000 genomes]
rs9485453	0.82[ASN][1000 genomes]
rs9485455	0.85[ASN][1000 genomes]
rs9498439	0.90[CHB][hapmap]
rs9498474	0.84[ASN][1000 genomes]
rs9498478	0.82[ASN][1000 genomes]
rs9498484	0.82[ASN][1000 genomes]
rs9498485	0.82[ASN][1000 genomes]
rs9498488	0.85[ASN][1000 genomes]
rs9498491	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101534800-101538400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:101534800-101540200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:101535000-101538400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:101535000-101538400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:101538000-101538800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:101538200-101538400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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