Variant report

Variant	rs6925854
Chromosome Location	chr6:150812775-150812776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150812081..150813728-chr6:150830490..150832623,2	MCF-7	breast:
2	chr6:150807751..150809812-chr6:150811234..150814298,3	K562	blood:
3	chr6:150806855..150809448-chr6:150811234..150813450,2	K562	blood:

Variant related genes	Relation type
ENSG00000219622	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11961060	0.83[ASN][1000 genomes]
rs4131416	0.83[ASN][1000 genomes]
rs4131417	0.81[ASN][1000 genomes]
rs4282419	0.96[ASN][1000 genomes]
rs4317421	0.96[ASN][1000 genomes]
rs4333428	0.81[ASN][1000 genomes]
rs4555931	0.96[ASN][1000 genomes]
rs6904218	0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs6908890	0.84[CHD][hapmap];0.83[ASN][1000 genomes]
rs6913362	0.89[ASN][1000 genomes]
rs6918187	0.80[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6919129	0.80[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7453224	0.82[ASN][1000 genomes]
rs7749721	0.83[ASN][1000 genomes]
rs7775952	0.83[ASN][1000 genomes]
rs9322262	0.89[ASN][1000 genomes]
rs9322263	0.80[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9371454	0.87[ASN][1000 genomes]
rs9372056	0.87[ASN][1000 genomes]
rs9372063	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs9383828	0.87[ASN][1000 genomes]
rs9384547	0.86[ASN][1000 genomes]
rs9384550	0.81[ASN][1000 genomes]
rs9397324	0.87[ASN][1000 genomes]
rs9398011	0.81[ASN][1000 genomes]
rs9480466	0.81[ASN][1000 genomes]
rs9480467	0.96[ASN][1000 genomes]
rs9480468	0.81[ASN][1000 genomes]
rs9480469	0.83[ASN][1000 genomes]
rs9480470	0.81[ASN][1000 genomes]
rs9480471	0.82[ASN][1000 genomes]
rs9480472	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150811200-150813200	Enhancers	Fetal Thymus	thymus
2	chr6:150811200-150815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150811400-150813200	Enhancers	Thymus	Thymus
4	chr6:150811400-150813800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:150811400-150814000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:150811400-150814800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150811400-150815000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:150811400-150815200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:150811600-150813200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:150811600-150813200	Enhancers	Esophagus	oesophagus
11	chr6:150811600-150813800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:150811800-150813200	Enhancers	GM12878-XiMat	blood
13	chr6:150811800-150813600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:150811800-150814000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:150812000-150813000	Enhancers	Gastric	stomach
16	chr6:150812000-150813200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:150812000-150813200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:150812000-150813600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr6:150812000-150814800	Enhancers	NH-A	brain
20	chr6:150812200-150812800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:150812200-150813000	Enhancers	Primary T cells from cord blood	blood
22	chr6:150812200-150813000	Flanking Active TSS	HMEC	breast
23	chr6:150812200-150813200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:150812200-150813200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:150812200-150813200	Enhancers	Fetal Intestine Large	intestine
26	chr6:150812200-150813600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:150812200-150814200	Enhancers	Stomach Mucosa	stomach
28	chr6:150812400-150813200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr6:150812400-150813200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr6:150812400-150814800	Enhancers	HUVEC	blood vessel
31	chr6:150812600-150812800	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:150812600-150813000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:150812600-150813200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:150812600-150813800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:150812600-150813800	Enhancers	NHEK	skin

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