Variant report

Variant	rs6927143
Chromosome Location	chr6:133524284-133524285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10872402	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12190309	0.83[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs12193038	0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12193158	0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12202540	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12204996	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12206438	0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1415858	0.92[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2180729	0.80[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs28620929	0.99[ASN][1000 genomes]
rs3756869	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3756871	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3756872	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3777785	0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs3777796	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs3777799	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs62430275	0.89[ASN][1000 genomes]
rs6569873	0.87[ASN][1000 genomes]
rs6912995	0.95[ASN][1000 genomes]
rs7746298	0.93[ASN][1000 genomes]
rs7752905	0.87[ASN][1000 genomes]
rs7754501	0.96[ASN][1000 genomes]
rs7763647	0.86[ASN][1000 genomes]
rs9321393	0.93[ASN][1000 genomes]
rs9373038	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9373041	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs9375940	0.83[ASN][1000 genomes]
rs9375942	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9375943	0.93[ASN][1000 genomes]
rs9375948	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs9375949	0.83[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9385640	0.83[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs9385641	0.82[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs9389052	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9389059	0.84[ASN][1000 genomes]
rs9389060	0.87[ASN][1000 genomes]
rs9389061	0.83[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs9399052	0.87[ASN][1000 genomes]
rs9399053	0.98[ASN][1000 genomes]
rs9399054	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9402484	0.87[ASN][1000 genomes]
rs9402485	0.86[ASN][1000 genomes]
rs9402486	0.87[ASN][1000 genomes]
rs9402487	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9402489	0.98[ASN][1000 genomes]
rs9402493	0.83[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs9402494	0.83[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs9402497	0.87[CHD][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs9483560	0.89[ASN][1000 genomes]
rs9493554	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv464058	chr6:133492507-133527935	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604698	chr6:133492507-133527935	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133523800-133524400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:133524000-133524800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133524000-133525000	Enhancers	Osteobl	bone
4	chr6:133524000-133528200	Weak transcription	Psoas Muscle	Psoas
5	chr6:133524200-133524400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:133524200-133524800	Enhancers	Muscle Satellite Cultured Cells	--

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