Variant report

Variant	rs6929720
Chromosome Location	chr6:64300240-64300241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64014940..64016503-chr6:64298402..64301314,2	MCF-7	breast:
2	chr6:64299036..64303200-chr6:64306803..64309022,3	K562	blood:
3	chr6:64290396..64294486-chr6:64298026..64303113,5	K562	blood:
4	chr6:64280638..64284436-chr6:64297924..64302125,5	MCF-7	breast:
5	chr6:64282036..64285416-chr6:64298341..64302251,6	MCF-7	breast:
6	chr6:64299735..64302076-chr6:64302449..64304977,2	K562	blood:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1062193	0.82[CEU][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754293	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11755111	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11756680	0.92[ASN][1000 genomes]
rs11757655	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759362	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11759581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1197892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1210839	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1681967	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16879705	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16894454	0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16894460	0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16894480	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894491	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16894493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1744156	1.00[CEU][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1744163	0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1872288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1905595	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1905597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1923521	0.92[ASN][1000 genomes]
rs1923522	0.92[ASN][1000 genomes]
rs2075656	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622310	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2622313	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28396397	0.92[ASN][1000 genomes]
rs28635226	0.92[ASN][1000 genomes]
rs2881842	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35468218	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35811627	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800494	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3857527	0.90[ASN][1000 genomes]
rs4710434	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56950873	0.92[ASN][1000 genomes]
rs56977573	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57258726	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57519486	0.92[ASN][1000 genomes]
rs57899418	0.92[ASN][1000 genomes]
rs58016244	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58173616	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58374599	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58779953	0.92[ASN][1000 genomes]
rs59458355	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59589817	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60727297	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60863270	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382532	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61426335	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61580957	0.90[ASN][1000 genomes]
rs6454298	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66500769	0.92[ASN][1000 genomes]
rs66508463	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66514362	0.81[EUR][1000 genomes]
rs66559225	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66618112	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66648865	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66683185	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66769846	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66924207	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66943356	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66984720	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67048845	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67118169	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67125777	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67260200	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67549604	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67640372	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67805256	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67879075	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67885904	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6936079	0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72880876	0.92[ASN][1000 genomes]
rs72880879	0.92[ASN][1000 genomes]
rs72880884	0.92[ASN][1000 genomes]
rs72882716	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72882748	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72882751	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746492	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7766283	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7766347	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7767556	0.92[ASN][1000 genomes]
rs9449520	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64284800-64307600	Weak transcription	Fetal Stomach	stomach
2	chr6:64290400-64307600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:64290400-64307600	Weak transcription	Brain Substantia Nigra	brain
4	chr6:64290600-64300400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:64290600-64302600	Weak transcription	Fetal Brain Male	brain
6	chr6:64290600-64307600	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:64291200-64307600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:64291400-64307800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:64291800-64307600	Weak transcription	Fetal Brain Female	brain
10	chr6:64294400-64301400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:64294600-64307600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:64299400-64301000	Enhancers	HepG2	liver
13	chr6:64299600-64300800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:64299600-64300800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:64299600-64300800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:64299600-64300800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:64299800-64300400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:64299800-64300600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:64299800-64300600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:64299800-64300600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:64299800-64300800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:64299800-64300800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:64300000-64300400	Enhancers	Brain Cingulate Gyrus	brain
24	chr6:64300000-64302800	Weak transcription	Liver	Liver
25	chr6:64300200-64300400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:64300200-64301000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:64300200-64301600	Weak transcription	Hela-S3	cervix

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