Variant report

Variant	rs6929935
Chromosome Location	chr6:151018442-151018443
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12661140	0.85[CEU][hapmap]
rs12663498	1.00[JPT][hapmap]
rs1494308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552886	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552888	0.89[AFR][1000 genomes]
rs1552889	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080057	0.85[CEU][hapmap]
rs17080062	0.85[CEU][hapmap]
rs17080069	0.85[CEU][hapmap]
rs17080087	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17080089	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs17080091	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17080093	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs17080102	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57139556	0.81[AMR][1000 genomes]
rs62434120	0.89[ASN][1000 genomes]
rs62434122	0.81[AMR][1000 genomes]
rs62434123	0.81[AMR][1000 genomes]
rs62434124	0.81[AMR][1000 genomes]
rs62434125	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62434129	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs654698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557082	1.00[JPT][hapmap]
rs6557083	1.00[JPT][hapmap]
rs6921304	0.80[MKK][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs9322273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322275	0.93[AMR][1000 genomes]
rs9322277	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322278	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397343	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151009000-151021200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:151009800-151018600	Weak transcription	Ovary	ovary
3	chr6:151012200-151023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:151013000-151020600	Enhancers	Primary B cells from cord blood	blood
5	chr6:151013200-151018600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:151014600-151021000	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:151015000-151020600	Weak transcription	Left Ventricle	heart
8	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
9	chr6:151015400-151018800	Weak transcription	GM12878-XiMat	blood
10	chr6:151015400-151025600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:151016800-151019400	Enhancers	Brain Substantia Nigra	brain
12	chr6:151017000-151018800	Enhancers	Adipose Nuclei	Adipose
13	chr6:151017200-151018800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:151017200-151019000	Enhancers	Fetal Stomach	stomach
15	chr6:151017400-151019000	Genic enhancers	Thymus	Thymus
16	chr6:151017400-151020600	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:151017600-151018800	Strong transcription	Fetal Thymus	thymus
18	chr6:151017600-151023800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:151017600-151029200	Weak transcription	Lung	lung
20	chr6:151017800-151025200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:151017800-151025600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:151017800-151027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:151018000-151018600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:151018200-151019000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:151018200-151019000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:151018200-151019000	Enhancers	Spleen	Spleen
27	chr6:151018200-151019200	Enhancers	Small Intestine	intestine
28	chr6:151018200-151019600	Enhancers	Liver	Liver
29	chr6:151018400-151018600	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:151018400-151018600	Enhancers	Psoas Muscle	Psoas
31	chr6:151018400-151018600	Enhancers	Rectal Smooth Muscle	rectum
32	chr6:151018400-151018600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:151018400-151018800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:151018400-151018800	Enhancers	Placenta	Placenta
35	chr6:151018400-151019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:151018400-151019000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:151018400-151019000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:151018400-151019000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:151018400-151019000	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr6:151018400-151019000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:151018400-151019200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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