Variant report

Variant	rs6930240
Chromosome Location	chr6:100796507-100796508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100791372..100793069-chr6:100796170..100798348,2	K562	blood:
2	chr6:100792831..100794448-chr6:100794579..100796890,2	K562	blood:
3	chr6:100794556..100797459-chr6:100798759..100800512,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17060420	0.81[EUR][1000 genomes]
rs2658151	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2658152	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9403695	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100790800-100796800	Enhancers	HSMM	muscle
2	chr6:100790800-100796800	Enhancers	NH-A	brain
3	chr6:100794000-100796600	Enhancers	HMEC	breast
4	chr6:100794800-100796600	Weak transcription	NHLF	lung
5	chr6:100794800-100796800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:100794800-100797000	Flanking Active TSS	Dnd41	blood
7	chr6:100794800-100797000	Enhancers	Osteobl	bone
8	chr6:100795000-100797800	Enhancers	NHDF-Ad	bronchial
9	chr6:100795800-100796800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:100795800-100796800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:100795800-100796800	Enhancers	HSMMtube	muscle
12	chr6:100795800-100797000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:100795800-100798000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:100796000-100797800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:100796000-100797800	Weak transcription	HUVEC	blood vessel
16	chr6:100796200-100796800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:100796200-100796800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr6:100796200-100797200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:100796200-100797400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:100796200-100800200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:100796400-100796800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:100796400-100796800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:100796400-100797200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:100796400-100798400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:100796400-100801400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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