Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10081146	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1320996	0.81[AMR][1000 genomes]
rs1474698	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1925148	0.80[AMR][1000 genomes]
rs1925165	0.81[ASN][1000 genomes]
rs2076473	0.83[ASN][1000 genomes]
rs2223598	0.80[AMR][1000 genomes]
rs3846919	0.86[ASN][1000 genomes]
rs3846926	0.81[AMR][1000 genomes]
rs3899394	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4140575	0.80[AMR][1000 genomes]
rs4452633	0.83[ASN][1000 genomes]
rs4712116	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4715590	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715594	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4715596	0.81[AMR][1000 genomes]
rs6459130	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6936386	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9296831	0.89[ASN][1000 genomes]
rs9296832	0.81[AMR][1000 genomes]
rs9296833	0.80[AMR][1000 genomes]
rs9349804	0.81[AMR][1000 genomes]
rs9367678	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56053400-56058600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:56055400-56058600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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