Variant report

Variant	rs6930522
Chromosome Location	chr6:101948938-101948939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13205777	0.82[LWK][hapmap]
rs2224201	0.85[LWK][hapmap];0.84[MEX][hapmap];0.90[YRI][hapmap]
rs4840191	0.89[YRI][hapmap]
rs6913883	0.90[YRI][hapmap]
rs6917120	0.85[LWK][hapmap];0.84[MEX][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv886459	chr6:101880376-101951502	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886460	chr6:101890395-101951502	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv886462	chr6:101916765-101951502	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886463	chr6:101922699-101951502	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886464	chr6:101922699-101962940	Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv5413	chr6:101931887-101958981	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv437519	chr6:101932126-101951502	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv437520	chr6:101935190-101953555	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604300	chr6:101935558-101948938	Inactive region	Chromatin interactive region	n/a	n/a	diseases
12	nsv604310	chr6:101936179-101948938	Inactive region	Chromatin interactive region	n/a	n/a	diseases
13	nsv604316	chr6:101937255-101948938	Inactive region	Chromatin interactive region	n/a	n/a	diseases
14	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6930522	ASCC3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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