Variant report

Variant	rs693104
Chromosome Location	chr5:151463117-151463118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151454167..151456163-chr5:151462520..151465246,3	K562	blood:
2	chr5:151455699..151457769-chr5:151461152..151464254,4	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs149093	0.81[ASN][1000 genomes]
rs149569	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs149570	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs150508	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508767	0.93[ASN][1000 genomes]
rs153525	0.86[ASN][1000 genomes]
rs153526	0.86[ASN][1000 genomes]
rs153527	0.88[ASN][1000 genomes]
rs154096	0.85[ASN][1000 genomes]
rs154098	0.86[ASN][1000 genomes]
rs154109	0.81[ASN][1000 genomes]
rs154110	0.86[ASN][1000 genomes]
rs154111	0.86[ASN][1000 genomes]
rs154112	0.81[ASN][1000 genomes]
rs154701	0.85[ASN][1000 genomes]
rs159495	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs159802	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs159819	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs159820	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159821	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs159822	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs160040	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs160041	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1650908	0.93[ASN][1000 genomes]
rs1650909	0.93[ASN][1000 genomes]
rs166197	0.80[ASN][1000 genomes]
rs1662206	0.93[ASN][1000 genomes]
rs1662207	0.93[ASN][1000 genomes]
rs1662208	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs167221	0.93[ASN][1000 genomes]
rs177439	0.81[ASN][1000 genomes]
rs185252	0.81[ASN][1000 genomes]
rs253726	0.81[ASN][1000 genomes]
rs2562388	0.93[ASN][1000 genomes]
rs2584912	0.93[ASN][1000 genomes]
rs2584913	0.91[ASN][1000 genomes]
rs2584914	0.91[ASN][1000 genomes]
rs2599478	0.93[ASN][1000 genomes]
rs297453	0.92[ASN][1000 genomes]
rs297454	0.93[ASN][1000 genomes]
rs29849	0.81[ASN][1000 genomes]
rs29855	0.80[ASN][1000 genomes]
rs300669	0.93[ASN][1000 genomes]
rs300670	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs303989	0.93[ASN][1000 genomes]
rs303990	0.93[ASN][1000 genomes]
rs303991	0.93[ASN][1000 genomes]
rs39806	0.80[ASN][1000 genomes]
rs471407	0.93[ASN][1000 genomes]
rs475253	0.93[ASN][1000 genomes]
rs482564	0.93[ASN][1000 genomes]
rs485313	0.93[ASN][1000 genomes]
rs487470	0.93[ASN][1000 genomes]
rs488335	0.93[ASN][1000 genomes]
rs489145	0.93[ASN][1000 genomes]
rs494362	0.93[ASN][1000 genomes]
rs4958292	0.93[ASN][1000 genomes]
rs497988	0.95[ASN][1000 genomes]
rs499767	0.93[ASN][1000 genomes]
rs501708	0.82[ASN][1000 genomes]
rs511292	0.93[ASN][1000 genomes]
rs513050	0.94[ASN][1000 genomes]
rs514032	0.93[ASN][1000 genomes]
rs515833	0.93[ASN][1000 genomes]
rs516675	0.93[ASN][1000 genomes]
rs523609	0.93[ASN][1000 genomes]
rs524587	0.93[ASN][1000 genomes]
rs526435	0.93[ASN][1000 genomes]
rs527312	0.93[ASN][1000 genomes]
rs529108	0.93[ASN][1000 genomes]
rs532857	0.93[ASN][1000 genomes]
rs534607	0.93[ASN][1000 genomes]
rs553933	0.93[ASN][1000 genomes]
rs556591	0.89[ASN][1000 genomes]
rs557546	0.93[ASN][1000 genomes]
rs577045	0.93[ASN][1000 genomes]
rs695205	0.93[ASN][1000 genomes]
rs72492470	0.93[ASN][1000 genomes]
rs804966	0.91[ASN][1000 genomes]
rs891164	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2444052	chr5:151455919-151463221	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3334997	chr5:151456109-151463407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3446868	chr5:151459109-151463407	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs693104	IL17B	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151462600-151464400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151463000-151463800	Weak transcription	Fetal Muscle Leg	muscle

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