Variant report

Variant	rs6931286
Chromosome Location	chr6:102188739-102188740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1222950	1.00[AMR][1000 genomes]
rs1337409	1.00[AMR][1000 genomes]
rs1415481	1.00[AMR][1000 genomes]
rs4604278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73512718	1.00[EUR][1000 genomes]
rs73512722	1.00[EUR][1000 genomes]
rs73512725	1.00[EUR][1000 genomes]
rs73512729	1.00[EUR][1000 genomes]
rs7764210	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016167	chr6:102152010-102198914	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102184400-102189200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:102187200-102189000	Weak transcription	Liver	Liver
3	chr6:102187200-102190400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:102187400-102190000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:102187600-102190000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:102187600-102190200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:102187600-102190400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:102187600-102190600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:102187800-102189000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:102187800-102189200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:102187800-102190200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:102187800-102190400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:102187800-102190400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:102187800-102191000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:102188000-102188800	Enhancers	Left Ventricle	heart
16	chr6:102188200-102189800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:102188600-102189000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:102188600-102190000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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