Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13205734	0.83[EUR][1000 genomes]
rs1358880	0.95[CHB][hapmap];0.88[CHD][hapmap];0.86[ASN][1000 genomes]
rs1853183	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2095374	0.98[ASN][1000 genomes]
rs2635109	0.81[ASN][1000 genomes]
rs2756333	0.81[ASN][1000 genomes]
rs2756336	0.81[ASN][1000 genomes]
rs278318	0.81[ASN][1000 genomes]
rs508269	0.81[ASN][1000 genomes]
rs515393	0.81[ASN][1000 genomes]
rs526770	0.81[ASN][1000 genomes]
rs527658	0.81[ASN][1000 genomes]
rs594174	0.81[ASN][1000 genomes]
rs6453754	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6933585	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937677	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694723	0.81[ASN][1000 genomes]
rs716314	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742773	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs795855	0.81[ASN][1000 genomes]
rs9343160	0.87[ASN][1000 genomes]
rs9343166	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9343171	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9352119	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9352121	0.87[ASN][1000 genomes]
rs9443037	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9447201	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886167	chr6:75102625-75175449	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv886168	chr6:75112715-75166715	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6932157	CD109	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75165600-75168400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:75166400-75166800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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