Variant report

Variant	rs6934173
Chromosome Location	chr6:100940246-100940247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100939724..100941535-chr6:101006405..101008824,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17060629	0.81[YRI][hapmap]
rs17060659	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3798484	0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs58927095	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6907007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6920026	0.92[ASN][1000 genomes]
rs6922126	0.88[AFR][1000 genomes]
rs6928357	0.82[AFR][1000 genomes]
rs6942018	0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7755091	0.85[YRI][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7755275	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7764271	0.90[AFR][1000 genomes]
rs7766553	0.84[ASN][1000 genomes]
rs9322060	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9390404	0.90[AFR][1000 genomes]
rs9485075	0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9485089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9485091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9485097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9485098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497479	0.84[ASN][1000 genomes]
rs9497547	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497585	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100937200-100941200	Weak transcription	Liver	Liver
2	chr6:100939600-100941000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:100940000-100941000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:100940000-100941000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:100940000-100941600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:100940000-100941600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:100940000-100941600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:100940200-100940600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:100940200-100941400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:100940200-100941400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:100940200-100941600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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