Variant report

Variant	rs6934294
Chromosome Location	chr6:150971509-150971510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150969221..150971594-chr6:150972938..150975653,2	K562	blood:

Variant related genes	Relation type
ENSG00000226599	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4869921	1.00[YRI][hapmap]
rs4869922	1.00[YRI][hapmap]
rs56050409	1.00[AMR][1000 genomes]
rs6940412	1.00[AMR][1000 genomes]
rs7741487	1.00[AMR][1000 genomes]
rs7761188	1.00[AMR][1000 genomes]
rs7761378	1.00[AMR][1000 genomes]
rs9478769	1.00[YRI][hapmap]
rs9480493	1.00[YRI][hapmap]
rs9480496	1.00[YRI][hapmap]
rs9480497	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150955800-150972400	Weak transcription	Fetal Stomach	stomach
2	chr6:150959800-150987400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150960400-150980600	Weak transcription	Stomach Mucosa	stomach
4	chr6:150961600-150975200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:150961600-150980200	Weak transcription	Lung	lung
6	chr6:150961800-150972600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:150963000-150979200	Weak transcription	Fetal Lung	lung
8	chr6:150963800-150974200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:150964000-150974000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:150964200-150975200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:150964600-150977400	Weak transcription	Small Intestine	intestine
12	chr6:150964600-150979200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:150964600-150980000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:150964800-150975400	Weak transcription	Fetal Kidney	kidney
15	chr6:150964800-150987400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:150965000-150971600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:150965000-150974600	Weak transcription	Thymus	Thymus
18	chr6:150967400-150975400	Weak transcription	Esophagus	oesophagus
19	chr6:150967800-150974400	Weak transcription	Spleen	Spleen
20	chr6:150967800-150980200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:150969000-150971800	Weak transcription	GM12878-XiMat	blood
22	chr6:150969200-150974000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:150971200-150971600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:150971200-150971600	Strong transcription	Primary B cells from cord blood	blood
25	chr6:150971200-150971600	Enhancers	Left Ventricle	heart
26	chr6:150971400-150978000	Strong transcription	Fetal Thymus	thymus
27	chr6:150971400-150979200	Weak transcription	Brain Substantia Nigra	brain

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