Variant report

Variant	rs6939470
Chromosome Location	chr6:132947392-132947393
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12213507	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs1569651	0.90[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap]
rs4380767	0.84[CEU][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs4537168	0.89[CEU][hapmap]
rs4543395	0.89[CEU][hapmap]
rs5008782	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6569815	0.83[MEX][hapmap];0.83[YRI][hapmap]
rs9385618	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs9389016	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9402439	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6939470	VNN1	cis	multi-tissue	Pritchard
rs6939470	VNN1	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links