Variant report

Variant	rs6939931
Chromosome Location	chr6:13134059-13134060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10485363	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755663	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966433	0.81[EUR][1000 genomes]
rs13192887	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220463	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873638	0.80[EUR][1000 genomes]
rs17323391	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183072	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327633	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603187	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385529	0.80[EUR][1000 genomes]
rs6907388	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562464	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13115000-13135400	Weak transcription	Lung	lung
2	chr6:13121600-13135200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:13124400-13137800	Weak transcription	Pancreas	Pancrea
4	chr6:13128200-13139600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:13128400-13139000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:13132000-13138400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:13132600-13135200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:13132600-13135400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:13132600-13139200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:13132800-13137800	Weak transcription	Left Ventricle	heart
11	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
12	chr6:13133200-13135400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:13133200-13136800	Weak transcription	Fetal Heart	heart
14	chr6:13133200-13138600	Weak transcription	Right Ventricle	heart
15	chr6:13133600-13137000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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