Variant report

Variant	rs6940075
Chromosome Location	chr6:12089946-12089947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12080468..12083295-chr6:12089215..12091323,2	K562	blood:
2	chr6:12089737..12092285-chr6:12096501..12098020,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10498679	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12176308	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12234132	0.82[JPT][hapmap]
rs16872277	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3734271	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs3777754	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs3777758	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs3777762	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3777769	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3777773	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3822926	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4467769	0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs55718117	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55943468	0.95[ASN][1000 genomes]
rs56176088	0.95[ASN][1000 genomes]
rs6907440	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6910959	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6916455	1.00[CEU][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6928420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826076	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72826081	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826086	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826088	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826091	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7751398	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9296253	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9296262	1.00[CEU][hapmap]
rs9349068	0.82[JPT][hapmap]
rs9349095	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9357278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs9366970	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9366972	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366980	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9369070	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9369072	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9369074	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369101	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9369106	0.90[EUR][1000 genomes]
rs9380764	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9380837	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9394517	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9394520	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs9394526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs9394540	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9394541	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12061600-12105200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:12061600-12109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:12065200-12095000	Weak transcription	NHDF-Ad	bronchial
4	chr6:12066400-12093000	Weak transcription	Fetal Thymus	thymus
5	chr6:12066400-12103600	Weak transcription	Pancreas	Pancrea
6	chr6:12066400-12107600	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:12066800-12109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:12068600-12090600	Weak transcription	Right Atrium	heart
9	chr6:12069600-12095200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:12070000-12090600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:12071600-12091800	Weak transcription	Esophagus	oesophagus
13	chr6:12071600-12093000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:12071800-12094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:12071800-12095400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:12071800-12098000	Weak transcription	NH-A	brain
17	chr6:12071800-12120400	Weak transcription	HepG2	liver
18	chr6:12072000-12093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:12072200-12092400	Weak transcription	Thymus	Thymus
20	chr6:12075800-12093400	Weak transcription	Colonic Mucosa	Colon
21	chr6:12077800-12098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:12077800-12113400	Weak transcription	HMEC	breast
23	chr6:12078000-12109800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:12078600-12092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:12078600-12093000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:12079200-12103600	Weak transcription	Fetal Intestine Large	intestine
27	chr6:12079400-12104600	Weak transcription	Fetal Intestine Small	intestine
28	chr6:12081800-12109800	Weak transcription	Aorta	Aorta
29	chr6:12082200-12090000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:12082200-12090800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:12082200-12091800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:12082200-12111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:12082200-12111400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:12082200-12112800	Weak transcription	Spleen	Spleen
35	chr6:12084200-12093200	Weak transcription	Brain Substantia Nigra	brain
36	chr6:12084400-12090600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:12084400-12090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:12084400-12090800	Weak transcription	Brain Angular Gyrus	brain
39	chr6:12084400-12092600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:12084400-12092600	Weak transcription	HSMM	muscle
41	chr6:12084400-12097800	Weak transcription	NHLF	lung
42	chr6:12084600-12093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:12084600-12095200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:12084600-12109600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:12084800-12095400	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:12084800-12098000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:12084800-12116600	Weak transcription	HSMMtube	muscle
48	chr6:12085200-12092800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:12085200-12095000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:12085600-12090600	Weak transcription	Gastric	stomach

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