Variant report

Variant	rs6941685
Chromosome Location	chr6:13129064-13129065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12206342	0.82[EUR][1000 genomes]
rs1223512	0.92[EUR][1000 genomes]
rs2327678	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4538692	0.88[EUR][1000 genomes]
rs4715124	0.89[EUR][1000 genomes]
rs6458677	0.95[ASN][1000 genomes]
rs6909002	0.98[ASN][1000 genomes]
rs6921579	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296614	0.82[EUR][1000 genomes]
rs9349466	0.92[ASN][1000 genomes]
rs9369888	0.82[EUR][1000 genomes]
rs9473524	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13115000-13135400	Weak transcription	Lung	lung
2	chr6:13121600-13131800	Weak transcription	Fetal Heart	heart
3	chr6:13121600-13135200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:13124200-13132400	Weak transcription	Right Ventricle	heart
5	chr6:13124400-13132400	Weak transcription	Left Ventricle	heart
6	chr6:13124400-13137800	Weak transcription	Pancreas	Pancrea
7	chr6:13125200-13131600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:13128200-13139600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:13128400-13139000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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