Variant report

Variant	rs6941705
Chromosome Location	chr6:133030537-133030538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1044593	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1073954	0.84[EUR][1000 genomes]
rs12195735	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs2050154	0.83[EUR][1000 genomes]
rs2223613	0.86[CEU][hapmap]
rs2247269	0.86[CEU][hapmap]
rs2247284	0.86[CEU][hapmap]
rs2247285	0.86[CEU][hapmap]
rs2251449	0.81[CEU][hapmap]
rs2251455	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs2262437	0.86[CEU][hapmap]
rs2262438	0.86[CEU][hapmap]
rs2300077	0.82[CEU][hapmap]
rs2745426	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2745427	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2745429	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs2745430	0.84[EUR][1000 genomes]
rs2745431	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2745436	0.86[CEU][hapmap]
rs2745437	0.86[CEU][hapmap]
rs2745439	0.86[CEU][hapmap]
rs2745440	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs2745441	0.86[CEU][hapmap]
rs2745442	0.86[CEU][hapmap]
rs2745443	0.86[CEU][hapmap]
rs2745444	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2745445	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2840813	0.83[EUR][1000 genomes]
rs2840815	0.86[CEU][hapmap]
rs2840816	0.86[CEU][hapmap]
rs2840817	0.86[CEU][hapmap]
rs2840820	0.86[CEU][hapmap]
rs2840821	0.86[CEU][hapmap]
rs2840822	0.86[CEU][hapmap]
rs2840823	0.86[CEU][hapmap]
rs2840825	0.86[CEU][hapmap]
rs2840826	0.86[CEU][hapmap]
rs3798792	0.82[CEU][hapmap]
rs3823026	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs4897605	0.84[EUR][1000 genomes]
rs4897612	0.82[CEU][hapmap]
rs6936833	0.86[CEU][hapmap]
rs909977	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs9389027	0.86[CEU][hapmap]
rs9399038	0.86[CEU][hapmap]
rs990499	0.86[CEU][hapmap]
rs990500	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133017800-133032200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:133028400-133031400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:133029000-133032200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:133029800-133030800	Enhancers	Placenta	Placenta
5	chr6:133030200-133032200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:133030200-133032400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links