Variant report

Variant	rs6941879
Chromosome Location	chr6:133632333-133632334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1336527	0.89[ASW][hapmap];0.85[CEU][hapmap];0.80[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.82[MKK][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1336528	0.93[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs1799679	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1932747	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211432	0.81[CHB][hapmap];0.95[CHD][hapmap]
rs211433	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs211438	0.94[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs211443	0.80[TSI][hapmap]
rs2765784	0.85[ASN][1000 genomes]
rs296415	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs296419	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs370735	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs448167	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473055	0.81[GIH][hapmap];0.80[TSI][hapmap]
rs512268	0.94[CEU][hapmap];0.84[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs561355	0.80[TSI][hapmap]
rs6924144	0.95[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7764052	0.97[ASN][1000 genomes]
rs9493590	0.95[LWK][hapmap];0.80[YRI][hapmap]
rs9493593	0.95[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9493595	0.80[YRI][hapmap]
rs950375	0.94[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6941879	LOC285735	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133623200-133636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133627000-133633200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133627400-133633200	Weak transcription	Psoas Muscle	Psoas
5	chr6:133627600-133637000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:133629400-133639600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133629800-133633000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:133631000-133635800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:133631200-133639000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:133631600-133635400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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