Variant report

Variant	rs6945888
Chromosome Location	chr7:101685978-101685979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SH2B2-5	chr7:101685040-101688225	ucscGeneNc_uc003uyy_2

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6973898	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6973996	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1027574	chr7:101654060-101718950	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv607985	chr7:101683563-101718950	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101642800-101697600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:101648200-101688000	Weak transcription	Ovary	ovary
3	chr7:101652800-101688400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:101653000-101688200	Weak transcription	Colonic Mucosa	Colon
5	chr7:101656000-101689200	Weak transcription	Aorta	Aorta
6	chr7:101665600-101688000	Weak transcription	Brain Angular Gyrus	brain
7	chr7:101667200-101688200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:101667600-101688000	Weak transcription	Brain Anterior Caudate	brain
9	chr7:101667600-101688000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:101667600-101688200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:101667600-101688400	Weak transcription	Fetal Brain Female	brain
12	chr7:101668000-101707200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:101668200-101688000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:101668600-101694200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:101671800-101688000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:101671800-101688400	Weak transcription	Fetal Brain Male	brain
17	chr7:101672000-101688000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:101672200-101688000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr7:101672200-101692200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:101672200-101697000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:101672400-101694000	Weak transcription	Primary T cells from cord blood	blood
22	chr7:101672400-101697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:101673000-101687800	Weak transcription	Fetal Lung	lung
24	chr7:101673000-101688200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:101673000-101689200	Weak transcription	Spleen	Spleen
26	chr7:101673200-101688000	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:101673200-101688000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr7:101673200-101688200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:101673200-101689200	Weak transcription	Pancreas	Pancrea
30	chr7:101673200-101692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:101673200-101694200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:101673400-101688000	Weak transcription	Adipose Nuclei	Adipose
33	chr7:101673600-101688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:101674200-101707400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:101674400-101688200	Weak transcription	Lung	lung
36	chr7:101674400-101696800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:101674400-101697000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:101674800-101692600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:101676000-101687800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:101676600-101688000	Weak transcription	Fetal Muscle Leg	muscle
41	chr7:101677000-101687400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:101679000-101695200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:101681000-101686200	Enhancers	Fetal Heart	heart
44	chr7:101681800-101688000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:101682400-101686400	Strong transcription	Fetal Intestine Small	intestine
46	chr7:101683200-101688000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:101683400-101691400	Enhancers	GM12878-XiMat	blood
48	chr7:101683600-101687800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr7:101683600-101687800	Weak transcription	Dnd41	blood
50	chr7:101683600-101688000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links