Variant report

Variant	rs6946207
Chromosome Location	chr7:147699995-147699996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1006505	0.81[YRI][hapmap]
rs10240221	1.00[CHB][hapmap]
rs10249855	1.00[CEU][hapmap]
rs10266911	0.85[YRI][hapmap]
rs10808049	0.82[CHB][hapmap]
rs11767010	0.84[CHB][hapmap]
rs11771941	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs12532284	1.00[CEU][hapmap]
rs12532290	0.95[CEU][hapmap]
rs13237695	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1541412	0.95[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17432092	0.82[CHB][hapmap]
rs17432209	0.92[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1922889	0.84[JPT][hapmap]
rs1997530	0.84[JPT][hapmap]
rs2141954	0.84[JPT][hapmap]
rs2178768	0.84[JPT][hapmap]
rs2178771	0.84[JPT][hapmap]
rs2189883	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2204926	0.84[JPT][hapmap]
rs2214681	0.91[CEU][hapmap]
rs2214682	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2707553	0.91[CHB][hapmap]
rs2707575	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2707576	0.83[CHB][hapmap]
rs2707581	0.85[JPT][hapmap]
rs2707582	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs2707585	0.84[JPT][hapmap]
rs2708248	0.83[CHB][hapmap]
rs2708261	0.80[JPT][hapmap]
rs2708284	0.84[JPT][hapmap]
rs2710074	0.81[AMR][1000 genomes]
rs2710075	0.84[CHB][hapmap]
rs2710082	0.84[JPT][hapmap]
rs2710127	0.83[JPT][hapmap]
rs2710157	0.92[CHB][hapmap]
rs2859687	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs4571659	0.92[CHB][hapmap];0.81[AMR][1000 genomes]
rs4725757	0.92[CHB][hapmap]
rs4725758	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4726903	0.95[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4726912	0.92[CHB][hapmap];0.81[AMR][1000 genomes]
rs4726918	0.81[EUR][1000 genomes]
rs6464849	0.88[EUR][1000 genomes]
rs66553749	0.85[ASN][1000 genomes]
rs6942912	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap]
rs6949561	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs6953539	0.95[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6969904	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6970083	0.81[AMR][1000 genomes]
rs757696	0.82[CHB][hapmap]
rs8180832	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs961519	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs9640247	0.91[YRI][hapmap]
rs977284	0.95[CEU][hapmap]
rs993715	0.90[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147697800-147700200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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