Variant report

Variant	rs6946435
Chromosome Location	chr7:138142957-138142958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138142373..138144059-chr7:138148709..138151590,2	MCF-7	breast:
2	chr7:138123228..138126392-chr7:138142592..138145835,3	K562	blood:
3	chr7:138129342..138131930-chr7:138142283..138144640,2	K562	blood:

Variant related genes	Relation type
ENSG00000214815	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10279876	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13230953	0.81[EUR][1000 genomes]
rs13236259	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35260646	1.00[ASN][1000 genomes]
rs35558871	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138140600-138144200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:138140600-138144200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:138140800-138143200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:138141200-138144200	Weak transcription	Liver	Liver
5	chr7:138141200-138144400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:138141200-138144400	Weak transcription	Right Atrium	heart
7	chr7:138141400-138143000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:138141400-138145000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:138141600-138143800	Weak transcription	Primary T cells from cord blood	blood
10	chr7:138142200-138143200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:138142400-138143200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:138142400-138143800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:138142600-138143000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:138142600-138143000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:138142600-138143200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:138142600-138143200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:138142600-138143200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:138142600-138143200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:138142600-138144200	Enhancers	HepG2	liver
20	chr7:138142800-138143200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:138142800-138143200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:138142800-138144400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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