Variant report

Variant	rs6946545
Chromosome Location	chr7:147576991-147576992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11561915	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs11561916	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs11761543	0.82[ASN][1000 genomes]
rs11769191	0.80[CEU][hapmap]
rs11771110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980029	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12533758	0.86[JPT][hapmap]
rs13234998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs13235220	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs17237331	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs1861009	0.81[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2215798	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2538973	0.86[JPT][hapmap]
rs2708242	0.87[ASN][1000 genomes]
rs2708244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710101	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2710109	0.87[JPT][hapmap]
rs34126004	0.82[ASN][1000 genomes]
rs34902210	0.82[ASN][1000 genomes]
rs35814206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57921419	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58175733	0.82[ASN][1000 genomes]
rs60467763	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60967951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv889398	chr7:147569595-147588768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
10	nsv608966	chr7:147574479-147588768	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147575600-147577200	Enhancers	Adipose Nuclei	Adipose
2	chr7:147575800-147577000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:147575800-147577200	Enhancers	Fetal Lung	lung
4	chr7:147576000-147577000	Enhancers	Fetal Intestine Large	intestine
5	chr7:147576000-147577000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:147576000-147577200	Enhancers	Brain Germinal Matrix	brain
7	chr7:147576000-147577400	Enhancers	Brain Cingulate Gyrus	brain
8	chr7:147576600-147578000	Enhancers	Brain Angular Gyrus	brain
9	chr7:147576600-147578200	Enhancers	Brain Anterior Caudate	brain
10	chr7:147576800-147577600	Enhancers	Brain Hippocampus Middle	brain
11	chr7:147576800-147577600	Enhancers	Brain Substantia Nigra	brain
12	chr7:147576800-147578400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:147576800-147582000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr7:147576800-147582200	Weak transcription	Monocytes-CD14+_RO01746	blood

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