Variant report

Variant	rs6947999
Chromosome Location	chr7:138109868-138109869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138103425..138105780-chr7:138107506..138110043,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10248876	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10248991	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10249020	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10249638	0.98[ASN][1000 genomes]
rs17169595	0.85[YRI][hapmap]
rs17169596	0.80[JPT][hapmap]
rs2353345	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2353346	0.85[ASN][1000 genomes]
rs2353347	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2353348	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883142	0.85[ASN][1000 genomes]
rs4361712	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4367480	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4574789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620232	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4626544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4732316	0.81[CHB][hapmap]
rs55924435	0.82[ASN][1000 genomes]
rs62491077	0.83[ASN][1000 genomes]
rs62491079	0.83[ASN][1000 genomes]
rs62491082	0.81[ASN][1000 genomes]
rs6467769	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467771	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6467772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6951998	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6953860	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954343	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6959223	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962241	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6962854	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968570	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980108	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7793703	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138109400-138110000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:138109600-138110200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr7:138109600-138110200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:138109800-138110200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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