Variant report

Variant	rs6948411
Chromosome Location	chr7:39455788-39455789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12111665	1.00[AMR][1000 genomes]
rs12112344	1.00[AMR][1000 genomes]
rs17171576	1.00[AMR][1000 genomes]
rs17171577	1.00[AMR][1000 genomes]
rs17171578	1.00[AMR][1000 genomes]
rs17171579	1.00[AMR][1000 genomes]
rs2237387	1.00[AMR][1000 genomes]
rs73386460	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386463	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386479	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388304	1.00[AMR][1000 genomes]
rs73388309	1.00[AMR][1000 genomes]
rs73388311	1.00[AMR][1000 genomes]
rs73388323	1.00[AMR][1000 genomes]
rs73388355	1.00[AMR][1000 genomes]
rs758247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39454600-39460600	Weak transcription	Brain Germinal Matrix	brain
2	chr7:39455000-39462000	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:39455200-39456200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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