Variant report

Variant	rs6948876
Chromosome Location	chr7:112382002-112382003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112380654..112382930-chr7:112384720..112386358,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10215501	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10216230	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10228483	0.88[EUR][1000 genomes]
rs10234058	0.94[EUR][1000 genomes]
rs10242871	0.95[EUR][1000 genomes]
rs10249701	0.93[ASN][1000 genomes]
rs10250630	0.84[EUR][1000 genomes]
rs10253054	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10256800	0.80[EUR][1000 genomes]
rs10257210	0.81[EUR][1000 genomes]
rs10261844	0.85[EUR][1000 genomes]
rs10265582	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10269793	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271752	0.95[ASN][1000 genomes]
rs10273060	0.94[EUR][1000 genomes]
rs10273589	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280916	0.86[EUR][1000 genomes]
rs10953717	0.84[EUR][1000 genomes]
rs11538991	0.83[EUR][1000 genomes]
rs11762442	0.92[EUR][1000 genomes]
rs1227155	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1227158	1.00[ASN][1000 genomes]
rs1227159	1.00[ASN][1000 genomes]
rs1227163	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1227168	0.90[ASN][1000 genomes]
rs1227171	0.86[ASN][1000 genomes]
rs1227172	0.90[ASN][1000 genomes]
rs1227174	0.90[ASN][1000 genomes]
rs1227176	0.90[ASN][1000 genomes]
rs1227177	0.95[ASN][1000 genomes]
rs1227178	0.95[ASN][1000 genomes]
rs1227181	0.95[ASN][1000 genomes]
rs1227183	0.95[ASN][1000 genomes]
rs1227190	0.90[ASN][1000 genomes]
rs1238698	0.90[ASN][1000 genomes]
rs1614000	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1718955	0.90[ASN][1000 genomes]
rs1718957	0.90[ASN][1000 genomes]
rs1718961	0.81[ASN][1000 genomes]
rs1718969	0.95[ASN][1000 genomes]
rs1796491	0.90[ASN][1000 genomes]
rs1796492	0.90[ASN][1000 genomes]
rs1796493	0.90[ASN][1000 genomes]
rs1796512	0.81[ASN][1000 genomes]
rs1796516	0.90[ASN][1000 genomes]
rs2457	0.90[ASN][1000 genomes]
rs2708295	0.81[ASN][1000 genomes]
rs2708296	0.81[ASN][1000 genomes]
rs2905274	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3734956	0.88[EUR][1000 genomes]
rs4490768	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56113805	0.96[EUR][1000 genomes]
rs56376790	0.85[EUR][1000 genomes]
rs6466419	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6466421	0.90[ASN][1000 genomes]
rs6955834	0.90[ASN][1000 genomes]
rs7777973	0.95[ASN][1000 genomes]
rs7778135	0.95[ASN][1000 genomes]
rs7780098	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7789772	0.90[ASN][1000 genomes]
rs7803405	0.90[ASN][1000 genomes]
rs9649356	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112374800-112384600	Weak transcription	Fetal Heart	heart
3	chr7:112379000-112382200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:112381000-112382200	Weak transcription	Aorta	Aorta
5	chr7:112381000-112382200	Weak transcription	Pancreas	Pancrea

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