Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10228901	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229791	1.00[AMR][1000 genomes]
rs10235266	1.00[YRI][hapmap]
rs10238335	1.00[AMR][1000 genomes]
rs10238929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243551	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10244187	1.00[AMR][1000 genomes]
rs10244718	1.00[YRI][hapmap]
rs10248746	1.00[AMR][1000 genomes]
rs10250037	1.00[AMR][1000 genomes]
rs10254479	1.00[AMR][1000 genomes]
rs10257455	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10257593	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10263672	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10267961	1.00[AMR][1000 genomes]
rs10268190	0.85[YRI][hapmap]
rs10274143	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278021	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13221540	0.87[YRI][hapmap]
rs13237142	0.87[YRI][hapmap]
rs13239569	0.87[YRI][hapmap]
rs28517374	1.00[AMR][1000 genomes]
rs4283984	0.85[YRI][hapmap]
rs6944720	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6963572	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789775	0.87[YRI][hapmap]
rs7792270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7798392	1.00[AMR][1000 genomes]
rs7810196	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
2	chr7:122193200-122219200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:122197800-122218600	Weak transcription	Lung	lung
4	chr7:122198000-122229000	Weak transcription	Fetal Lung	lung
5	chr7:122200600-122219400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:122209200-122221400	Weak transcription	Liver	Liver
7	chr7:122213000-122221200	Weak transcription	Ovary	ovary
8	chr7:122214000-122222600	Weak transcription	Duodenum Mucosa	Duodenum

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