Variant report

Variant	rs6949561
Chromosome Location	chr7:147720864-147720865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147719801..147721661-chr7:147724450..147725973,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10240221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10249855	0.86[YRI][hapmap]
rs10808049	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs11767010	0.81[CHB][hapmap]
rs11771941	0.92[CHB][hapmap]
rs13237695	0.82[ASN][1000 genomes]
rs1541412	0.92[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17432092	0.86[CHB][hapmap]
rs17432209	0.93[CHB][hapmap]
rs2189883	0.86[CHB][hapmap]
rs2214682	0.84[CHB][hapmap]
rs2527049	0.84[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2527051	0.96[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2707553	0.93[CHB][hapmap]
rs2707554	0.84[YRI][hapmap]
rs2707560	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2707563	0.96[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2707575	0.86[CHB][hapmap]
rs2707576	0.86[CHB][hapmap]
rs2707580	0.81[CHB][hapmap]
rs2707581	0.81[CHB][hapmap]
rs2708248	0.86[CHB][hapmap]
rs2710074	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2710075	0.87[CHB][hapmap]
rs2710127	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs2710132	0.95[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2710135	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2710157	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859687	0.86[CHB][hapmap]
rs4571659	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725757	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4725758	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4726903	0.92[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4726912	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6942912	1.00[CHB][hapmap]
rs6946207	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs6953539	0.92[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6969904	1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6970083	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs757696	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8180832	0.92[CHB][hapmap]
rs961519	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993715	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147719200-147723800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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