Variant report

Variant	rs6950264
Chromosome Location	chr7:126772602-126772603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10954143	0.89[JPT][hapmap]
rs1361955	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs1419424	0.84[LWK][hapmap]
rs1858784	0.86[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2040502	0.84[CEU][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs2106183	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs2237785	0.88[JPT][hapmap]
rs2283094	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2299533	0.88[JPT][hapmap]
rs2299540	0.94[JPT][hapmap]
rs2299542	0.86[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap]
rs2402855	0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7808643	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv437572	chr7:126772562-126781574	Inactive region	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6950264	CCDC136	cis	parietal	SCAN
rs6950264	KLHDC10	cis	cerebellum	SCAN
rs6950264	IQUB	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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