Variant report

Variant	rs6950791
Chromosome Location	chr7:101780458-101780459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101779605..101781887-chr7:101783457..101786248,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10953358	0.84[EUR][1000 genomes]
rs1637257	0.84[EUR][1000 genomes]
rs169307	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1734879	0.84[EUR][1000 genomes]
rs1902	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs201435	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs201436	0.83[EUR][1000 genomes]
rs201438	0.82[EUR][1000 genomes]
rs201440	0.82[EUR][1000 genomes]
rs201441	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201442	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201443	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201445	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201446	0.83[EUR][1000 genomes]
rs201447	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201448	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201449	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201450	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201451	0.84[EUR][1000 genomes]
rs201452	0.84[EUR][1000 genomes]
rs201453	0.84[EUR][1000 genomes]
rs201454	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201455	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201456	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201457	0.84[EUR][1000 genomes]
rs201458	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs201459	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs201461	0.84[EUR][1000 genomes]
rs201468	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs201469	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs201470	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs201471	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs201472	0.93[EUR][1000 genomes]
rs201475	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs201477	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201478	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201480	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201481	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201482	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201485	0.91[EUR][1000 genomes]
rs201486	0.91[EUR][1000 genomes]
rs201489	0.93[EUR][1000 genomes]
rs201490	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs201491	0.86[CEU][hapmap]
rs201492	0.94[EUR][1000 genomes]
rs201493	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs201497	0.95[EUR][1000 genomes]
rs201498	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs201500	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201502	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201503	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201504	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201505	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201507	0.96[EUR][1000 genomes]
rs201508	0.96[EUR][1000 genomes]
rs201509	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs201511	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201514	0.82[ASN][1000 genomes]
rs201515	0.82[ASN][1000 genomes]
rs201516	0.82[ASN][1000 genomes]
rs201517	0.82[ASN][1000 genomes]
rs201518	0.82[ASN][1000 genomes]
rs201519	0.82[ASN][1000 genomes]
rs201520	0.82[ASN][1000 genomes]
rs201521	0.82[ASN][1000 genomes]
rs201522	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201526	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201527	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201529	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201530	0.83[ASN][1000 genomes]
rs2529095	0.93[EUR][1000 genomes]
rs2529373	0.82[EUR][1000 genomes]
rs2734782	0.92[EUR][1000 genomes]
rs34247954	0.84[EUR][1000 genomes]
rs367333	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs380175	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs382228	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs411354	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs417013	0.81[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs436287	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs443963	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4729776	0.85[EUR][1000 genomes]
rs6465851	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6970800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101755200-101787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:101760200-101796000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101760400-101788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:101760400-101789400	Weak transcription	Right Ventricle	heart
5	chr7:101760400-101795800	Weak transcription	Left Ventricle	heart
6	chr7:101761000-101795600	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:101763600-101790400	Weak transcription	Brain Anterior Caudate	brain
8	chr7:101765200-101788600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
10	chr7:101765600-101783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:101765800-101783800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr7:101766000-101784600	Weak transcription	HUVEC	blood vessel
14	chr7:101766000-101796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:101766000-101796000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:101766000-101796000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:101766200-101781000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:101766200-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:101766200-101796000	Weak transcription	Esophagus	oesophagus
20	chr7:101766200-101796600	Weak transcription	Brain Germinal Matrix	brain
21	chr7:101768000-101793800	Weak transcription	K562	blood
22	chr7:101768800-101784600	Weak transcription	Adipose Nuclei	Adipose
23	chr7:101768800-101790200	Weak transcription	Spleen	Spleen
24	chr7:101768800-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:101768800-101795200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:101769000-101780600	Weak transcription	Lung	lung
27	chr7:101769000-101781800	Weak transcription	HSMMtube	muscle
28	chr7:101769000-101784000	Weak transcription	GM12878-XiMat	blood
29	chr7:101769000-101789600	Weak transcription	HSMM	muscle
30	chr7:101769000-101790000	Weak transcription	Ovary	ovary
31	chr7:101769000-101792400	Weak transcription	Gastric	stomach
32	chr7:101769000-101795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:101769000-101795400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:101769000-101795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:101769000-101795800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:101771200-101795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr7:101771400-101796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:101771800-101784600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:101771800-101785400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr7:101772000-101784200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:101772000-101795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:101772000-101796800	Weak transcription	Liver	Liver
43	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr7:101772600-101785000	Weak transcription	Fetal Intestine Large	intestine
45	chr7:101773400-101784400	Weak transcription	Fetal Muscle Leg	muscle
46	chr7:101773400-101795400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr7:101773600-101792800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:101773600-101795200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:101773600-101795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:101773600-101801200	Weak transcription	Aorta	Aorta

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