Variant report

Variant	rs6951477
Chromosome Location	chr7:104281393-104281394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1072699	0.87[CEU][hapmap]
rs10953443	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11768912	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705266	0.87[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs1547977	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1547978	0.82[ASN][1000 genomes]
rs6974634	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73181859	0.82[EUR][1000 genomes]
rs759532	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7812002	0.81[EUR][1000 genomes]
rs9692289	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6951477	PIK3CG	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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