Variant report

Variant	rs6951873
Chromosome Location	chr7:104038572-104038573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104037895..104040401-chr7:104043770..104046307,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10228106	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap]
rs10249235	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10254627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487203	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953427	0.82[GIH][hapmap]
rs10953428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap]
rs10953432	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs1123760	0.95[CEU][hapmap]
rs12705208	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs1468143	1.00[CEU][hapmap];0.97[GIH][hapmap];0.83[TSI][hapmap]
rs1468144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap]
rs17390895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989823	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs2040584	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs2188482	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2188493	0.89[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs2188494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap]
rs2214086	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap]
rs2214087	0.82[GIH][hapmap]
rs4236567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727596	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs4727599	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap]
rs4730001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap]
rs4730002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730006	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs4730007	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs6465985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap]
rs6946555	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6952170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs6959400	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7778325	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7798273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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