Variant report

Variant	rs6953879
Chromosome Location	chr7:126373509-126373510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126368803..126371577-chr7:126373352..126375062,2	K562	blood:
2	chr7:126371685..126373556-chr7:126380338..126382419,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1008906	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10275004	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10275020	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10487452	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11764888	0.83[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11765912	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11767976	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs11770188	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs11773107	0.83[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1345211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1468157	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17149953	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17150011	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17610771	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17612316	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs2157821	0.80[CEU][hapmap]
rs2299495	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41463444	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4731326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62477942	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62477944	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62477945	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62477947	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6467098	0.86[JPT][hapmap]
rs7805288	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7805959	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9690442	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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